SunDigest Incubation chamber

MALDI Imaging of Proteins and Peptides

MALDI mass spectrometry imaging (MALDI-MSI) enables the visualization of the spatial distribution of a broad range of analytes within thin slices of samples such as human, animal or plant tissue.

While small molecules like pharmaceuticals and lipids can be ionized directly after matrix deposition on the sample, a direct analysis of the vast majority of proteins is not possible. Larger proteins, membrane proteins or even protein complexes with several subunits need to be cut into smaller peptide fragments which then can be subsequently ionized and analyzed by MALDI MS.

As a matter of fact, a successful and reproducible digestion process is essential for any MALDI-MSI of proteins.

Completely Controlled Digestion Process

The SunDigest incubation device provides a fully software controlled and highly reproducible digestion process under standardized conditions. Temperatures between 4°C and 50°C as well as an ideal humidity for the incubation are precisely adjustable.

A typical protease digestion of proteins is performed in solution. In case of a MALDI-MSI experiment, it is not possible to simply distribute a layer of protease solution over the tissue sample to perform the reaction since such an ‘in solution’ on-tissue digestion would result in the loss of the spatial resolution of the analytes. Instead of ‘in solution’ an efficient on-tissue digestion can also be performed under high humidity between 95-100%. The big advantage of this procedure is that it allows the preservation of the spatial resolution. Certainly this process needs to be precisely controlled to allow a highly efficient digestion and reproducible results. SunDigest is the only solution to establish transferable incubation protocols for any kind of on-tissue incubation.

Today, chemically modified trypsin is typically used for on-tissue digestions since it is highly active and a very stable molecule which is extremely resistant to autolytic digestion. The modified enzyme however, was shown to have its maximum performance at 50°C instead of the commonly applied 37°C (Havlis et al. Anal. Chem. 2003, 75, 1300-1306). Therefore, performing an on-tissue digestion for MALDI-MSI at 50°C is very reasonable. Not only because it saves time, but it also minimizes analyte diffusion during the incubation which can negatively affect the spatial resolution.

Table 1: Recommended parameters for tryptic on-tissue digestion of proteins
Temperature Humidity Incubation Time
 
37 °C
95 % 4-16 h
 
50 °C
95 % 2-5 h

Since the water condensation effect is significantly higher at 50°C compared to 37°C, the lid of the SunDigest incubation chamber is actively temperature regulated. The heated lid prevents any water condensation which could in the worst case result in the loss of the sample due to water dripping onto the tissue surface. The heated lid is essential for enabling a high performance digestion process at 50°C, making SunDigest the only instrument worldwide that allows a fast and safe high-performance on-tissue digestion. The reaction can be performed within a minimum of time, an additional factor that needs to be taken into account to preserve the spatial resolution of the analytes (Figure1).

Figure 1: Tissue distribution of two different peptides generated by trypsin digestion for 2 h at 50°C using the SunDigest incubation chamber. Spatial resolution of images: 100 μm. (Courtesy of Björn Meyer, ABIMAS, Mannheim)

Mode of Operation

The SunDigest incubator actively controls, regulates and records three different temperatures:

  1. Base temperature
  2. Inner temperature
    (on-tissue temperature)
  3. Cover temperature

The optimal humidity, which can be defined by the operator in %, is regulated by a well-reasoned interaction of heating and circulation of condensing water from the water reservoir. After the incubation, an automatic cool-down of the samples can be performed by the instrument.

After each run, the corresponding diagram of all recorded parameters can be saved for documentation. Figure 2 shows a typical SunDigest run for two hours at 37°C.


Figure 2: SunDigest run chart of a two hour incubation at 37°C and 95%
humidity.

For relatively simple applications like on-tissue digestion of proteins, SunDigest is operated in Basic-Mode. The user only has to define the incubation temperature, the incubation time and the optimal humidity (Figure 3). All additional On/Off, heating and cooling operations are regulated automatically by the software.

Figure 3: Method setup of SunDigest’s Basic Mode.  The basic parameters humidity (%), temperature (°C) and incubation time can be defined. An automatic cooldown of the samples can be programmed to be performed after the incubation.

Beyond such simple operations, SunDigest incubation chamber can be used for much more complex reaction procedures. Operating SunDigest in Smart-Mode enables the user to develop an individual incubation program composed of a series of On/Off, heating and cooling events (Figure 4).

Figure 4: Method setup of SunDigest’s Smart Mode.  The Smart Mode allows to set up a completely user defined incubation program.

Figure 5 shows the diagrams of all recorded incubation parameters resulting from the Basic-Mode and Smart-Mode settings shown in Figure 3 and 4, respectively. The low fan speed that was programmed in the Smart Mode resulted in a less fluctuating humidity which can help to enhance the effectivity of the digestion process.

Figure 5: SunDigest run charts of a two hour incubation at 50°C. Run chart [A] was performed in Basic mode at 50°C and 100% humidity. Run chart [B] was performed using the smart mode with 50°C base temperature, 45°C lid temperature and a low fan speed of 2% starting after 15 minutes of the incubation. The Smart-Mode method [B] results in a more consistently high humidity of about 100% which helps to enhance the digestion efficiency.

Outstanding Features of the SunDigest for On-Tissue Digestion

  • Temperatures precisely adjustable between 4°C and 50°C
  • On-Tissue digestion process under optimal humidity
  • Preservation of spatial resolution
  • Extremely time saving: High performance digestion at 50°C
  • Full digestion process control
  • Essential for reproducible results

Brochure SunDigest